STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP43728.1Nucleotidyl transferase of uncharacterised function (DUF1814). (303 aa)    
Predicted Functional Partners:
CUP43700.1
Protein of unknwon function (DUF2893).
 
   
 0.965
CUP43766.1
Uncharacterised protein.
       0.600
CUP43800.1
AraC family transcriptional regulator.
       0.600
CUP99097.1
Uncharacterised protein.
  
     0.542
CUP43647.1
Mobilization protein.
       0.527
CUP43615.1
Bacterial RNA polymerase%2C alpha chain C terminal domain.
       0.518
CUP43516.1
Conjugative transposon TraN protein.
       0.508
CUP43552.1
Uncharacterised protein.
       0.508
CUP43583.1
Uncharacterised protein.
       0.508
CUP99159.1
Putative TonB dependent outer membrane protein.
  
     0.470
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.