STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP60877.1F5/8 type C domain. (404 aa)    
Predicted Functional Partners:
CUP60908.1
Chitobiase.
 
    0.934
CUP60839.1
RagB/SusD domain protein.
 
     0.933
CUP60802.1
Putative outer membrane protein.
 
     0.928
CUP67807.1
Putative outer membrane protein.
 
     0.778
CUP67921.1
Chitobiase.
 
     0.777
CUP50032.1
TonB-dependent receptor plug.
 
     0.775
CUP67845.1
RagB/SusD domain protein.
 
     0.775
CUO66883.1
RagB/SusD domain protein.
 
     0.774
CUO49407.1
RagB/SusD domain protein.
 
     0.773
CUP46747.1
RagB/SusD domain protein.
 
     0.773
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.