STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP65463.1Conjugate transposon protein. (207 aa)    
Predicted Functional Partners:
CUP65404.1
Conjugate transposon protein.
     0.981
traC_2
Conjugate transposon protein.
     0.950
CUP65504.1
Conjugate transposon protein.
 
     0.942
CUP65556.1
Conjugate transposon protein.
 
     0.933
traE_2
Putative transmembrane conserved protein found in conjugative transposon.
 
   
 0.921
CUP65270.1
Conjugate transposon protein.
 
   
 0.878
CUP65299.1
Conjugate transposon protein.
 
     0.870
CUP65203.1
Conjugate transposon protein.
 
  
 0.842
CUP65028.1
Conjugate transposon protein.
 
   
 0.819
CUP01570.1
Putative transmembrane mobilisation protein.
 
  
 0.789
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.