STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP68529.1Uncharacterised protein. (421 aa)    
Predicted Functional Partners:
vspIM
Modification methylase VspI.
     0.993
imd
Alpha-galactosidase.
  
     0.728
traM
Putative conjugative transposon protein traM.
  
     0.702
CUP70001.1
Copper amine oxidase domain-containing protein.
 
     0.687
cirA_2
Putative TonB-related exported protein.
  
    0.683
CUP70141.1
PRTRC system protein E.
  
     0.658
CUQ02927.1
Transposase IS4 family protein.
  
     0.639
hsdR
typeI restriction enzyme EcoR124II R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.626
CUO89180.1
Uncharacterised protein.
  
 
 0.626
CUQ19748.1
Transposase.
  
     0.626
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.