STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP69266.1Uncharacterised protein. (204 aa)    
Predicted Functional Partners:
CUP69154.1
Putative transmembrane protein.
       0.713
traE_3
Putative conjugative transposon protein traE.
       0.699
traF_2
Putative conjugative transposon protein traF.
       0.697
virB4
Conjugate transposon protein.
       0.695
CUP69242.1
Conjugate transposon protein.
       0.657
CUP69212.1
Conjugative transposon TraJ protein.
       0.641
CUP69181.1
Conjugate transposon protein.
       0.608
traM
Putative conjugative transposon protein traM.
       0.596
traP
Putative conjugative transposon protein traP.
       0.595
CUP69097.1
Conjugative transposon TraN protein.
       0.560
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.