STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP70412.1DNA binding domain%2C excisionase family. (107 aa)    
Predicted Functional Partners:
CUP70481.1
DNA binding domain-containing protein.
 
    
0.866
CUP70443.1
DNA-binding protein.
 
    
0.856
CUP70001.1
Copper amine oxidase domain-containing protein.
 
     0.776
CUP69492.1
Conjugate transposon protein.
 
    0.766
traM
Putative conjugative transposon protein traM.
  
     0.759
traQ
Putative conjugative transposon protein traQ.
  
     0.757
CUP69077.1
Conjugative transposon protein TraO.
  
     0.753
CUP69528.1
Uncharacterised protein.
  
     0.746
CUQ03727.1
Copper amine oxidase domain-containing protein.
 
     0.742
CUP65749.1
Conjugate transposon protein.
 
     0.717
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.