STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecI_4Putative ECF-type RNA polymerase; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)    
Predicted Functional Partners:
CUP71673.1
Anti-sigma factor.
 
   0.858
CUO69425.1
Fe2+-dicitrate sensor%2C membrane component.
 
   0.741
CUQ23260.1
Anti-sigma factor.
 
   0.739
CUO51291.1
anti-FecI sigma factor%2C FecR.
 
   0.738
CUP84461.1
Anti-sigma factor.
 
   0.737
CUP88464.1
Fe2+-dicitrate sensor%2C membrane component.
 
   0.736
CUQ08961.1
Fe2+-dicitrate sensor%2C membrane component.
 
   0.726
CUO53585.1
Fe2+-dicitrate sensor%2C membrane component.
 
   0.724
CUP50060.1
Fe2+-dicitrate sensor%2C membrane component.
 
   0.723
CUP67563.1
anti-FecI sigma factor%2C FecR.
 
   0.720
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.