STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP78091.1Uncharacterised protein. (252 aa)    
Predicted Functional Partners:
CUP78059.1
Uncharacterised protein.
 
    0.900
CUP77951.1
Uncharacterised protein.
 
     0.859
qseF_2
Transcriptional regulator.
       0.843
secG
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
       0.843
pdxA1
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
       0.836
CUP19545.1
Sporulation related domain.
 
     0.764
CUP77873.1
Peptidyl-prolyl cis-trans isomerase.
 
     0.756
CUP53382.1
Protein of uncharacterised function (DUF3822).
  
     0.748
rlmN_2
Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.740
CUO66361.1
Uncharacterised protein.
  
     0.713
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.