STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP82626.1ATP-dependent DNA helicase. (215 aa)    
Predicted Functional Partners:
CUP82654.1
Histone H1-like protein Hc1.
       0.699
CUP82589.1
Uncharacterised protein.
       0.647
CUO79375.1
ABC transporter ATP-binding protein.
 
    0.554
CUQ07562.1
Putative transport-related membrane protein.
  
     0.537
CUP19048.1
Domain of uncharacterised function (DUF3332).
  
     0.532
CUP39829.1
Domain of uncharacterised function (DUF3332).
  
     0.500
CUP56753.1
TonB.
  
    0.485
hsdR
typeI restriction enzyme EcoR124II R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
  
 0.464
CUO89180.1
Uncharacterised protein.
  
  
 0.464
CUP82683.1
Predicted AAA-ATPase.
 
     0.441
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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