STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbbL_2Glycosyltransferase. (360 aa)    
Predicted Functional Partners:
CUP89055.1
Lauroyl/myristoyl acyltransferase.
 
  
 0.888
miaB_2
Fe-S oxidoreductase.
       0.843
mgsA_1
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
       0.795
CUP89009.1
Putative long-chain-fatty-acid--CoA ligase.
       0.690
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
 
    0.576
wcaJ_1
Glycosyltransferase.
 
  
 0.543
arnC_2
Putative glycosyltransferase.
 
  
 0.529
CUP24092.1
Na+/H+ antiporter.
 
     0.516
CUO60063.1
Protein of uncharacterised function (DUF2723).
 
     0.499
bamD
Outer membrane assembly lipoprotein YfiO.
  
     0.489
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.