STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP91711.1Uncharacterised protein. (261 aa)    
Predicted Functional Partners:
CUP91742.1
Putative lipoprotein.
 
    0.933
CUQ07188.1
Lipoprotein.
 
    0.800
CUP91682.1
Uncharacterised protein.
       0.773
CUQ07088.1
Putative lipoprotein.
 
    0.762
CUO67595.1
Lipid A 3-O-deacylase-related protein.
  
     0.715
CUO71339.1
VanZ like family.
  
     0.707
CUQ11381.1
Peptidase S1 and S6 chymotrypsin/Hap.
  
     0.656
CUP02936.1
Protein of uncharacterised function (DUF2874).
  
     0.654
CUO91327.1
SusD family.
  
     0.611
CUP12132.1
Lipid A 3-O-deacylase (PagL).
  
     0.577
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.