STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraR_5Two-component system response regulator. (451 aa)    
Predicted Functional Partners:
divJ_2
Two-component system sensor histidine kinase.
  
 
 0.873
zraS_2
Two-component system sensor histidine kinase.
 
 
 0.867
rpoN
RNA polymerase sigma-54.
 
  
 0.788
CUP94245.1
Outer membrane protein.
       0.566
luxQ_5
PAS domain S-box.
  
 
 0.499
zraS_1
Two-component system sensor histidine kinase.
 
 
 0.488
luxQ_1
Signal transduction histidine kinase.
  
 
 0.481
CUP94382.1
ABC transporter permease.
 
   
 0.469
dctB_1
Two-component system sensor histidine kinase.
 
 
 0.454
dctB_2
Putative two-component system sensor histidine kinase protein.
 
 
 0.435
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.