STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_10Putative phage integrase; Belongs to the 'phage' integrase family. (409 aa)    
Predicted Functional Partners:
xerD_11
Putative phage integrase; Belongs to the 'phage' integrase family.
 
   
0.830
int
Putative bacteriophage integrase; Belongs to the 'phage' integrase family.
  
     0.676
xerC_1
Site-specific recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.515
CUP98743.1
Uncharacterised protein.
       0.510
xerD_7
Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.504
CUO83419.1
Integrase; Belongs to the 'phage' integrase family.
  
     0.458
xerD_12
integrase%2C site-specific recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.451
bmgB
Mobilization protein.
  
     0.449
CUQ22660.1
Putative excisionase.
 
     0.445
CUQ25045.1
Integrase; Belongs to the 'phage' integrase family.
  
     0.434
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.