STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaK1Putative phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (432 aa)    
Predicted Functional Partners:
paaI
Uncharacterized domain 1.
 
 
 0.976
CUQ04331.1
ACT domain-containing protein.
 
   0.959
paaK2
Putative phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
  
 
0.905
uvrB
UvrABC SOS-repair system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dis [...]
       0.702
CUO91976.1
Putative indolepyruvate oxidoreductase/indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
    0.671
bamD
Outer membrane assembly lipoprotein YfiO.
       0.628
CUQ04391.1
RNA polymerase Rpb6.
       0.619
putA
Proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.589
CUO92012.1
Putative indolepyruvate oxidoreductase subunit.
 
  
 0.566
CUQ04422.1
Uncharacterised protein.
       0.560
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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