Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OBX65510.1 | uvrA | A9309_02015 | A9309_02020 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.445 |
OBX65510.1 | yjjV | A9309_02015 | A9309_02025 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.408 |
moeB_2 | yjjV | A9309_02030 | A9309_02025 | tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.601 |
uvrA | OBX65510.1 | A9309_02020 | A9309_02015 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.445 |
uvrA | yjjV | A9309_02020 | A9309_02025 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.533 |
yjjV | OBX65510.1 | A9309_02025 | A9309_02015 | Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.408 |
yjjV | moeB_2 | A9309_02025 | A9309_02030 | Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.601 |
yjjV | uvrA | A9309_02025 | A9309_02020 | Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.533 |