STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQG71722.1Holin; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)    
Predicted Functional Partners:
AQG71721.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AQG71723.1
Endolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.767
AQG71724.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
AQG71716.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
AQG71717.1
Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
AQG71718.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
AQG71719.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
AQG71720.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
AQG71725.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
AQG71726.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
Your Current Organism:
Lactobacillus rhamnosus
NCBI taxonomy Id: 47715
Other names: ATCC 7469, CCUG 21452, CIP A157, DSM 20021, IFO 3425, L. rhamnosus, LMG 6400, LMG:6400, Lactobacillus casei rhamnosus, Lactobacillus casei subsp. rhamnosus, Lactobacillus sp. NCIM 2587, Lactobacillus sp. W6, Lactobacillus sp. X9, NBRC 3425, NCAIM B.01147, NCCB 46033, NCDO 243, NCIB 6375, NCIMB 6375, NCTC 12953, NCTC 13764, NRRL B-442, VKM B-574
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