STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQG72944.1Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)    
Predicted Functional Partners:
AQG72939.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.907
AQG72947.1
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.885
AQG72938.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.882
AQG72951.1
Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.850
AQG72489.1
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.837
AQG72950.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.836
AQG72953.1
ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.826
AQG72952.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.825
divIB
Cell division protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
   
 
 0.787
AQG72955.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.780
Your Current Organism:
Lactobacillus rhamnosus
NCBI taxonomy Id: 47715
Other names: ATCC 7469, CCUG 21452, CIP A157, DSM 20021, IFO 3425, L. rhamnosus, LMG 6400, LMG:6400, Lactobacillus casei rhamnosus, Lactobacillus casei subsp. rhamnosus, Lactobacillus sp. NCIM 2587, Lactobacillus sp. W6, Lactobacillus sp. X9, NBRC 3425, NCAIM B.01147, NCCB 46033, NCDO 243, NCIB 6375, NCIMB 6375, NCTC 12953, NCTC 13764, NRRL B-442, VKM B-574
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.