Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KYC_08040 | KYC_08055 | KYC_08040 | KYC_08055 | Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family. | Hypothetical protein. | 0.844 |
KYC_08040 | KYC_08060 | KYC_08040 | KYC_08060 | Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family. | COG0500 SAM-dependent methyltransferases. | 0.643 |
KYC_08040 | KYC_08065 | KYC_08040 | KYC_08065 | Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family. | Hypothetical protein. | 0.575 |
KYC_08040 | KYC_08070 | KYC_08040 | KYC_08070 | Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family. | NAD-dependent epimerase/dehydratase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases. | 0.747 |
KYC_08040 | KYC_08075 | KYC_08040 | KYC_08075 | Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family. | Hypothetical protein; COG1232 Protoporphyrinogen oxidase. | 0.736 |
KYC_08055 | KYC_08040 | KYC_08055 | KYC_08040 | Hypothetical protein. | Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family. | 0.844 |
KYC_08055 | KYC_08060 | KYC_08055 | KYC_08060 | Hypothetical protein. | COG0500 SAM-dependent methyltransferases. | 0.609 |
KYC_08055 | KYC_08065 | KYC_08055 | KYC_08065 | Hypothetical protein. | Hypothetical protein. | 0.810 |
KYC_08055 | KYC_08070 | KYC_08055 | KYC_08070 | Hypothetical protein. | NAD-dependent epimerase/dehydratase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases. | 0.795 |
KYC_08055 | KYC_08075 | KYC_08055 | KYC_08075 | Hypothetical protein. | Hypothetical protein; COG1232 Protoporphyrinogen oxidase. | 0.807 |
KYC_08060 | KYC_08040 | KYC_08060 | KYC_08040 | COG0500 SAM-dependent methyltransferases. | Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family. | 0.643 |
KYC_08060 | KYC_08055 | KYC_08060 | KYC_08055 | COG0500 SAM-dependent methyltransferases. | Hypothetical protein. | 0.609 |
KYC_08060 | KYC_08065 | KYC_08060 | KYC_08065 | COG0500 SAM-dependent methyltransferases. | Hypothetical protein. | 0.584 |
KYC_08060 | KYC_08070 | KYC_08060 | KYC_08070 | COG0500 SAM-dependent methyltransferases. | NAD-dependent epimerase/dehydratase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases. | 0.598 |
KYC_08060 | KYC_08075 | KYC_08060 | KYC_08075 | COG0500 SAM-dependent methyltransferases. | Hypothetical protein; COG1232 Protoporphyrinogen oxidase. | 0.624 |
KYC_08060 | KYC_10963 | KYC_08060 | KYC_10963 | COG0500 SAM-dependent methyltransferases. | COG2124 Cytochrome P450. | 0.604 |
KYC_08060 | KYC_27553 | KYC_08060 | KYC_27553 | COG0500 SAM-dependent methyltransferases. | Cytochrome P450:oxidoreductase FAD/NAD(P)-binding protein; COG2124 Cytochrome P450. | 0.623 |
KYC_08060 | bioD | KYC_08060 | KYC_26557 | COG0500 SAM-dependent methyltransferases. | Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.706 |
KYC_08060 | gcvP | KYC_08060 | KYC_22651 | COG0500 SAM-dependent methyltransferases. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.667 |
KYC_08060 | metH | KYC_08060 | KYC_05786 | COG0500 SAM-dependent methyltransferases. | B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.591 |
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