STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYC_13097COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)    
Predicted Functional Partners:
KYC_13092
FecR family protein; COG3712 Fe2+-dicitrate sensor, membrane component.
 
  0.956
KYC_10673
FecR family protein; COG3712 Fe2+-dicitrate sensor, membrane component.
  
 0.847
KYC_02809
COG3712 Fe2+-dicitrate sensor, membrane component.
  
  0.815
KYC_04097
Iron sensor; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  0.815
KYC_21631
FecR family protein; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  0.815
KYC_22061
anti-FecI sigma factor FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  0.815
KYC_24132
FecR family protein; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  0.815
KYC_26032
FecR protein; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  0.815
KYC_09986
COG3712 Fe2+-dicitrate sensor, membrane component.
  
  0.814
KYC_14672
FecR family protein; COG3712 Fe2+-dicitrate sensor, membrane component.
  
  0.814
Your Current Organism:
Achromobacter arsenitoxydans
NCBI taxonomy Id: 477184
Other names: A. arsenitoxydans SY8, Achromobacter arsenitoxydans SY8, Achromobacter arsenitoxydans str. SY8, Achromobacter arsenitoxydans strain SY8, Achromobacter sp. SY8, arsenite-oxidizing bacterium SY8
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.