Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KYC_17863 | KYC_17868 | KYC_17863 | KYC_17868 | COG3564 Uncharacterized protein conserved in bacteria. | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.911 |
KYC_17863 | KYC_17873 | KYC_17863 | KYC_17873 | COG3564 Uncharacterized protein conserved in bacteria. | Sigma-54 interaction domain-containing protein 1; COG3284 Transcriptional activator of acetoin/glycerol metabolism. | 0.500 |
KYC_17863 | glcB | KYC_17863 | KYC_12038 | COG3564 Uncharacterized protein conserved in bacteria. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.462 |
KYC_17868 | KYC_17863 | KYC_17868 | KYC_17863 | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | COG3564 Uncharacterized protein conserved in bacteria. | 0.911 |
KYC_17868 | KYC_17873 | KYC_17868 | KYC_17873 | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | Sigma-54 interaction domain-containing protein 1; COG3284 Transcriptional activator of acetoin/glycerol metabolism. | 0.589 |
KYC_17873 | KYC_17863 | KYC_17873 | KYC_17863 | Sigma-54 interaction domain-containing protein 1; COG3284 Transcriptional activator of acetoin/glycerol metabolism. | COG3564 Uncharacterized protein conserved in bacteria. | 0.500 |
KYC_17873 | KYC_17868 | KYC_17873 | KYC_17868 | Sigma-54 interaction domain-containing protein 1; COG3284 Transcriptional activator of acetoin/glycerol metabolism. | COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. | 0.589 |
glcB | KYC_17863 | KYC_12038 | KYC_17863 | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | COG3564 Uncharacterized protein conserved in bacteria. | 0.462 |