Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KYC_19734Hypothetical protein. (203 aa)    
Predicted Functional Partners:
KYC_19739
Hypothetical protein.
       0.773
KYC_19744
PepT family ABC transporter ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.512
KYC_19749
COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.512
KYC_19754
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.512
KYC_19759
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.512
KYC_19729
Large tegument domain-containing protein.
       0.454
Your Current Organism:
Achromobacter arsenitoxydans
NCBI taxonomy Id: 477184
Other names: A. arsenitoxydans SY8, Achromobacter arsenitoxydans SY8, Achromobacter arsenitoxydans str. SY8, Achromobacter arsenitoxydans strain SY8, Achromobacter sp. SY8, arsenite-oxidizing bacterium SY8
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