STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYC_23398Tetratricopeptide repeat family protein 1; COG0457 FOG: TPR repeat. (826 aa)    
Predicted Functional Partners:
KYC_23403
Glycosyl transferase group 1; COG0457 FOG: TPR repeat.
  
    0.871
KYC_23423
COG3524 Capsule polysaccharide export protein.
  
  
 0.764
KYC_23413
COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
  
 0.728
KYC_23418
Sugar ABC transporter ATPase; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
  
  
 0.707
KYC_23408
COG1596 Periplasmic protein involved in polysaccharide export.
  
  
 0.690
KYC_23393
Protein CapL; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.687
KYC_08110
COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
  
  
 0.515
KYC_27022
COG1596 Periplasmic protein involved in polysaccharide export.
   
  
 0.482
KYC_08115
COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
  
 0.444
KYC_23428
Vi polysaccharide export protein VexE; COG0457 FOG: TPR repeat.
     
 0.436
Your Current Organism:
Achromobacter arsenitoxydans
NCBI taxonomy Id: 477184
Other names: A. arsenitoxydans SY8, Achromobacter arsenitoxydans SY8, Achromobacter arsenitoxydans str. SY8, Achromobacter arsenitoxydans strain SY8, Achromobacter sp. SY8, arsenite-oxidizing bacterium SY8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.