STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJP01124.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
AJP01123.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.825
hisS
histidyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.738
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
     0.733
AJP01126.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.733
AJP01127.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.676
AJP01128.1
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
AJP01156.1
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.579
AJP02075.1
Tyrosinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.555
AJP02076.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.551
AJP05574.1
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.530
Your Current Organism:
Streptomyces cyaneogriseus
NCBI taxonomy Id: 477245
Other names: S. cyaneogriseus subsp. noncyanogenus, Streptomyces cyaneogriseus subsp. noncyanogenus
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