STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJP01442.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)    
Predicted Functional Partners:
AJP01434.1
Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.988
AJP01438.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.977
AJP03047.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.936
AJP01440.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.928
AJP01441.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.908
AJP01439.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.867
AJP01444.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.833
AJP01443.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.830
AJP01437.1
Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.724
AJP00808.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.715
Your Current Organism:
Streptomyces cyaneogriseus
NCBI taxonomy Id: 477245
Other names: S. cyaneogriseus subsp. noncyanogenus, Streptomyces cyaneogriseus subsp. noncyanogenus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.