node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AJP03690.1 | AJP04189.1 | TU94_21580 | TU94_24685 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.473 |
AJP03690.1 | AJP05560.1 | TU94_21580 | TU94_07500 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. | 0.402 |
AJP03690.1 | polA | TU94_21580 | TU94_08600 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.985 |
AJP03690.1 | radA | TU94_21580 | TU94_14705 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.513 |
AJP03690.1 | recA | TU94_21580 | TU94_24430 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.990 |
AJP03690.1 | recX | TU94_21580 | TU94_24435 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Modulates RecA activity; Belongs to the RecX family. | 0.560 |
AJP03690.1 | rpoB | TU94_21580 | TU94_19425 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.870 |
AJP03690.1 | topA | TU94_21580 | TU94_15115 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.991 |
AJP04189.1 | AJP03690.1 | TU94_24685 | TU94_21580 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.473 |
AJP04189.1 | AJP05863.1 | TU94_24685 | TU94_24350 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.776 |
AJP04189.1 | polA | TU94_24685 | TU94_08600 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.853 |
AJP04189.1 | recA | TU94_24685 | TU94_24430 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.901 |
AJP04189.1 | topA | TU94_24685 | TU94_15115 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.936 |
AJP05560.1 | AJP03690.1 | TU94_07500 | TU94_21580 | DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.402 |
AJP05560.1 | lexA | TU94_07500 | TU94_24605 | DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. | LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.841 |
AJP05560.1 | polA | TU94_07500 | TU94_08600 | DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.684 |
AJP05560.1 | radA | TU94_07500 | TU94_14705 | DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.760 |
AJP05560.1 | recA | TU94_07500 | TU94_24430 | DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.926 |
AJP05560.1 | recX | TU94_07500 | TU94_24435 | DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. | Hypothetical protein; Modulates RecA activity; Belongs to the RecX family. | 0.691 |
AJP05560.1 | rpoB | TU94_07500 | TU94_19425 | DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.405 |