Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T261_2020Hypothetical protein. (222 aa)    
Predicted Functional Partners:
T261_2021
Zinc import ATP-binding protein ZnuC.
    
  0.867
T261_2019
Hypothetical protein.
       0.779
T261_2022
Hypothetical protein.
       0.704
T261_2023
Hypothetical protein.
       0.637
AQY20311.1
UPF0276 protein.
       0.544
T261_4406
Hypothetical protein.
  
 
 0.450
T261_1697
Hypothetical protein.
  
  0.401
T261_4057
Hypothetical protein.
  
  0.401
T261_4059
Hypothetical protein.
  
  0.401
T261_4611
Hypothetical protein.
  
  0.401
Your Current Organism:
Streptomyces lydicus
NCBI taxonomy Id: 47763
Other names: ATCC 25470, BCRC 11919, CBS 703.69, CCRC 11919, CCRC:11919, CECT 3163, DSM 40461, IFO 13058, IMET 43531, ISP 5461, JCM 4492, LMG 19331, LMG:19331, NBRC 13058, NCIMB 12977, NRRL 2433, NRRL-ISP 5461, S. lydicus
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