Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T261_3000Hypothetical protein. (227 aa)    
Predicted Functional Partners:
T261_1622
Hypothetical protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.913
T261_1399
Hypothetical protein.
 
 
 0.830
T261_7397
Dimethylglycine oxidase; Belongs to the GcvT family.
    
 0.685
T261_2999
Hypothetical protein.
       0.666
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
     
 0.606
T261_1619
Hypothetical protein.
 
 
 0.564
T261_1624
Hypothetical protein.
 
  
 0.549
T261_7951
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
  
 0.537
T261_6469
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
  
 0.530
AQY20506.1
Hypothetical protein.
 
 
 0.524
Your Current Organism:
Streptomyces lydicus
NCBI taxonomy Id: 47763
Other names: ATCC 25470, BCRC 11919, CBS 703.69, CCRC 11919, CCRC:11919, CECT 3163, DSM 40461, IFO 13058, IMET 43531, ISP 5461, JCM 4492, LMG 19331, LMG:19331, NBRC 13058, NCIMB 12977, NRRL 2433, NRRL-ISP 5461, S. lydicus
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