Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T261_3161Hypothetical protein. (270 aa)    
Predicted Functional Partners:
T261_4122
Hypothetical protein.
 
    0.785
T261_4123
Hypothetical protein.
 
   
 0.779
T261_1080
Hypothetical protein.
 
     0.676
T261_6005
Hypothetical protein.
 
     0.628
T261_6006
Hypothetical protein.
  
     0.581
T261_2867
Hypothetical protein; Belongs to the helicase family. UvrD subfamily.
 
     0.539
T261_1392
Hypothetical protein.
 
     0.528
T261_3160
Methylmalonyl-CoA mutase.
       0.514
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
 
   
 0.497
T261_5775
N-acetylmuramoyl-L-alanine amidase.
    
 0.476
Your Current Organism:
Streptomyces lydicus
NCBI taxonomy Id: 47763
Other names: ATCC 25470, BCRC 11919, CBS 703.69, CCRC 11919, CCRC:11919, CECT 3163, DSM 40461, IFO 13058, IMET 43531, ISP 5461, JCM 4492, LMG 19331, LMG:19331, NBRC 13058, NCIMB 12977, NRRL 2433, NRRL-ISP 5461, S. lydicus
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