Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AQY20224.1 | T261_2861 | T261_00802 | T261_2861 | Hypothetical protein. | ATP-dependent DNA helicase UvrD2. | 0.992 |
AQY20224.1 | T261_3763 | T261_00802 | T261_3763 | Hypothetical protein. | Hypothetical protein. | 0.474 |
AQY20224.1 | T261_3846 | T261_00802 | T261_3846 | Hypothetical protein. | DNA polymerase III subunit gamma/tau. | 0.506 |
AQY20224.1 | T261_4105 | T261_00802 | T261_4105 | Hypothetical protein. | Hypothetical protein. | 0.995 |
AQY20224.1 | T261_5504 | T261_00802 | T261_5504 | Hypothetical protein. | Hypothetical protein. | 0.460 |
AQY20224.1 | T261_6444 | T261_00802 | T261_6444 | Hypothetical protein. | Hypothetical protein. | 0.571 |
AQY20224.1 | dinB | T261_00802 | T261_7231 | Hypothetical protein. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.571 |
AQY20224.1 | dnaA | T261_00802 | T261_4146 | Hypothetical protein. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.505 |
AQY20224.1 | polA | T261_00802 | T261_6182 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.900 |
T261_2861 | AQY20224.1 | T261_2861 | T261_00802 | ATP-dependent DNA helicase UvrD2. | Hypothetical protein. | 0.992 |
T261_2861 | T261_3763 | T261_2861 | T261_3763 | ATP-dependent DNA helicase UvrD2. | Hypothetical protein. | 0.580 |
T261_2861 | T261_3846 | T261_2861 | T261_3846 | ATP-dependent DNA helicase UvrD2. | DNA polymerase III subunit gamma/tau. | 0.638 |
T261_2861 | T261_4105 | T261_2861 | T261_4105 | ATP-dependent DNA helicase UvrD2. | Hypothetical protein. | 0.987 |
T261_2861 | T261_5504 | T261_2861 | T261_5504 | ATP-dependent DNA helicase UvrD2. | Hypothetical protein. | 0.442 |
T261_2861 | T261_6444 | T261_2861 | T261_6444 | ATP-dependent DNA helicase UvrD2. | Hypothetical protein. | 0.521 |
T261_2861 | dinB | T261_2861 | T261_7231 | ATP-dependent DNA helicase UvrD2. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.521 |
T261_2861 | dnaA | T261_2861 | T261_4146 | ATP-dependent DNA helicase UvrD2. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.400 |
T261_2861 | polA | T261_2861 | T261_6182 | ATP-dependent DNA helicase UvrD2. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.991 |
T261_3763 | AQY20224.1 | T261_3763 | T261_00802 | Hypothetical protein. | Hypothetical protein. | 0.474 |
T261_3763 | T261_2861 | T261_3763 | T261_2861 | Hypothetical protein. | ATP-dependent DNA helicase UvrD2. | 0.580 |
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