Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
T261_4138 | T261_4139 | T261_4138 | T261_4139 | Putative chromosome-partitioning protein ParB; Belongs to the ParB family. | Sporulation initiation inhibitor protein Soj. | 0.994 |
T261_4138 | T261_4141 | T261_4138 | T261_4141 | Putative chromosome-partitioning protein ParB; Belongs to the ParB family. | Hypothetical protein. | 0.660 |
T261_4138 | T261_4142 | T261_4138 | T261_4142 | Putative chromosome-partitioning protein ParB; Belongs to the ParB family. | Membrane protein insertase YidC. | 0.624 |
T261_4138 | rsmG | T261_4138 | T261_4140 | Putative chromosome-partitioning protein ParB; Belongs to the ParB family. | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.916 |
T261_4139 | T261_4138 | T261_4139 | T261_4138 | Sporulation initiation inhibitor protein Soj. | Putative chromosome-partitioning protein ParB; Belongs to the ParB family. | 0.994 |
T261_4139 | T261_4141 | T261_4139 | T261_4141 | Sporulation initiation inhibitor protein Soj. | Hypothetical protein. | 0.631 |
T261_4139 | T261_4142 | T261_4139 | T261_4142 | Sporulation initiation inhibitor protein Soj. | Membrane protein insertase YidC. | 0.655 |
T261_4139 | rsmG | T261_4139 | T261_4140 | Sporulation initiation inhibitor protein Soj. | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.943 |
T261_4141 | T261_4138 | T261_4141 | T261_4138 | Hypothetical protein. | Putative chromosome-partitioning protein ParB; Belongs to the ParB family. | 0.660 |
T261_4141 | T261_4139 | T261_4141 | T261_4139 | Hypothetical protein. | Sporulation initiation inhibitor protein Soj. | 0.631 |
T261_4141 | T261_4142 | T261_4141 | T261_4142 | Hypothetical protein. | Membrane protein insertase YidC. | 0.984 |
T261_4141 | rsmG | T261_4141 | T261_4140 | Hypothetical protein. | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.947 |
T261_4142 | T261_4138 | T261_4142 | T261_4138 | Membrane protein insertase YidC. | Putative chromosome-partitioning protein ParB; Belongs to the ParB family. | 0.624 |
T261_4142 | T261_4139 | T261_4142 | T261_4139 | Membrane protein insertase YidC. | Sporulation initiation inhibitor protein Soj. | 0.655 |
T261_4142 | T261_4141 | T261_4142 | T261_4141 | Membrane protein insertase YidC. | Hypothetical protein. | 0.984 |
T261_4142 | T261_5851 | T261_4142 | T261_5851 | Membrane protein insertase YidC. | Hypothetical protein. | 0.423 |
T261_4142 | T261_6122 | T261_4142 | T261_6122 | Membrane protein insertase YidC. | Hypothetical protein. | 0.423 |
T261_4142 | frr | T261_4142 | T261_2428 | Membrane protein insertase YidC. | Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.558 |
T261_4142 | rpoB | T261_4142 | T261_4656 | Membrane protein insertase YidC. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.424 |
T261_4142 | rsmG | T261_4142 | T261_4140 | Membrane protein insertase YidC. | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.815 |
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