STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T261_4836Hypothetical protein. (416 aa)    
Predicted Functional Partners:
T261_2335
Hybrid signal transduction histidine kinase J.
  
  
 0.970
T261_5168
Hypothetical protein.
  
 
 0.944
T261_6997
Hypothetical protein.
  
  
 0.923
T261_3996
Hypothetical protein.
  
  
 0.890
T261_2434
RNA polymerase sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.786
T261_2804
RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.
  
  
 0.786
T261_3919
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
  
  
 0.786
T261_3920
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
  
  
 0.786
T261_5033
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
  
  
 0.786
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]
 
 
   0.771
Your Current Organism:
Streptomyces lydicus
NCBI taxonomy Id: 47763
Other names: ATCC 25470, BCRC 11919, CBS 703.69, CCRC 11919, CCRC:11919, CECT 3163, DSM 40461, IFO 13058, IMET 43531, ISP 5461, JCM 4492, LMG 19331, LMG:19331, NBRC 13058, NCIMB 12977, NRRL 2433, NRRL-ISP 5461, S. lydicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.