STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T261_5186Osmoprotectant import permease protein OsmY. (276 aa)    
Predicted Functional Partners:
T261_5185
Hypothetical protein.
  
 0.995
T261_5187
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 
 0.971
T261_3692
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 
 0.924
T261_4252
Hypothetical protein.
 
  
 0.870
T261_3688
Hypothetical protein.
 
  
 0.869
AQY20444.1
Hypothetical protein.
 
    
0.834
T261_5188
Hypothetical protein.
       0.771
T261_5189
4-hydroxyphenylpyruvate dioxygenase.
       0.685
T261_5184
Hypothetical protein.
       0.679
T261_5190
Glycolate oxidase subunit GlcD.
       0.586
Your Current Organism:
Streptomyces lydicus
NCBI taxonomy Id: 47763
Other names: ATCC 25470, BCRC 11919, CBS 703.69, CCRC 11919, CCRC:11919, CECT 3163, DSM 40461, IFO 13058, IMET 43531, ISP 5461, JCM 4492, LMG 19331, LMG:19331, NBRC 13058, NCIMB 12977, NRRL 2433, NRRL-ISP 5461, S. lydicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.