Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
T261_5530 | T261_6382 | T261_5530 | T261_6382 | UPF0053 protein Mbc. | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | 0.615 |
T261_6380 | T261_6381 | T261_6380 | T261_6381 | Hypothetical protein. | Hypothetical protein. | 0.721 |
T261_6380 | T261_6382 | T261_6380 | T261_6382 | Hypothetical protein. | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | 0.721 |
T261_6380 | T261_6385 | T261_6380 | T261_6385 | Hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.481 |
T261_6380 | nadK | T261_6380 | T261_6383 | Hypothetical protein. | NAD kinase 2; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.721 |
T261_6381 | T261_6380 | T261_6381 | T261_6380 | Hypothetical protein. | Hypothetical protein. | 0.721 |
T261_6381 | T261_6382 | T261_6381 | T261_6382 | Hypothetical protein. | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | 0.853 |
T261_6381 | T261_6385 | T261_6381 | T261_6385 | Hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.481 |
T261_6381 | nadK | T261_6381 | T261_6383 | Hypothetical protein. | NAD kinase 2; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.853 |
T261_6382 | T261_5530 | T261_6382 | T261_5530 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | UPF0053 protein Mbc. | 0.615 |
T261_6382 | T261_6380 | T261_6382 | T261_6380 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | Hypothetical protein. | 0.721 |
T261_6382 | T261_6381 | T261_6382 | T261_6381 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | Hypothetical protein. | 0.853 |
T261_6382 | T261_6385 | T261_6382 | T261_6385 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.641 |
T261_6382 | nadK | T261_6382 | T261_6383 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | NAD kinase 2; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.938 |
T261_6382 | nadK-2 | T261_6382 | T261_8194 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | NAD kinase 1; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.650 |
T261_6382 | rpoB | T261_6382 | T261_4656 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.509 |
T261_6382 | rpoC | T261_6382 | T261_4657 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.735 |
T261_6382 | rsmG | T261_6382 | T261_4140 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.564 |
T261_6382 | whiB-3 | T261_6382 | T261_2859 | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | Putative transcriptional regulator WhiB7; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.539 |
T261_6385 | T261_6380 | T261_6385 | T261_6380 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Hypothetical protein. | 0.481 |
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