STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH85485.1Homologs of previously reported genes of unknown function. (311 aa)    
Predicted Functional Partners:
gyrA
DNA gyrase subunit A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.800
CCH86288.1
Homologs of previously reported genes of unknown function.
  
     0.700
CCH85478.1
Homologs of previously reported genes of unknown function.
 
     0.649
CCH87401.1
Homologs of previously reported genes of unknown function.
  
     0.580
CCH85720.1
Homologs of previously reported genes of unknown function.
  
     0.561
CCH89344.1
Homologs of previously reported genes of unknown function.
  
     0.561
CCH89331.1
Homologs of previously reported genes of unknown function.
  
     0.554
CCH87291.1
Homologs of previously reported genes of unknown function.
  
     0.552
CCH87391.1
Homologs of previously reported genes of unknown function.
  
     0.535
rbpA
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.535
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.