STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbpAPeptidoglycan glycosyltransferase, penicillin-binding protein A; Function of strongly homologous gene; enzyme. (498 aa)    
Predicted Functional Partners:
rodA
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Function of strongly homologous gene; cell process; Belongs to the SEDS family.
 0.999
ftsW
Cell division protein FtsW; Function of strongly homologous gene; cell process; Belongs to the SEDS family.
 0.990
dacB
D-alanyl-D-alanine carboxypeptidase, serine-type (modular protein); Function of strongly homologous gene; enzyme.
     
 0.951
ftsI
Cell division protein FtsI/penicillin-binding protein 2; Function of strongly homologous gene; enzyme.
  
  
0.950
dacD
Protein of unknown function; Gene remnant; Belongs to the peptidase S11 family.
  
 
 0.947
CCH87869.1
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
 
 
 0.941
ponA
Membrane carboxypeptidase (Penicillin-binding protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.930
CCH85500.1
Homologs of previously reported genes of unknown function.
 
  
 0.926
CCH88133.1
Penicillin-binding protein transpeptidase.
 
0.910
CCH90939.1
Peptidoglycan glycosyltransferase (Penicillin-binding protein); Function of strongly homologous gene; enzyme.
 
 
0.909
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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