STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH85549.1Signal transduction histidine kinase; Function of strongly homologous gene; enzyme. (161 aa)    
Predicted Functional Partners:
CCH85550.1
Anti-sigma factor antagonist (fragment); Function of strongly homologous gene; factor.
  
   0.719
motA
Flagellar motor protein A; Function of strongly homologous gene; structure.
   
    0.514
fliG
Flagellar motor switch protein fliG; Function of strongly homologous gene; structure.
   
    0.514
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.514
flgK
Flagellar hook-associated protein FlgK; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the flagella basal body rod proteins family.
   
    0.514
CCH85554.1
Serine phosphatase RsbU, regulator of sigma subunit; Function of strongly homologous gene; enzyme.
  
 
 0.493
fbiC
FO synthase, 7, 8-didemethyl-8-hydroxy-5-deazariboflavin synthase; Function of strongly homologous gene; enzyme.
   
    0.483
fliA
RNA polymerase, sigma 28 subunit for flagellar operon; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
  
 
 0.429
CCH86497.1
Homologs of previously reported genes of unknown function.
  
 
 0.429
sigF
RNA polymerase sigma-F factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
  
 
 0.429
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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