STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yedX5-hydroxyisourate hydrolase; Function of strongly homologous gene; enzyme; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (105 aa)    
Predicted Functional Partners:
CCH85587.1
Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Function of strongly homologous gene; enzyme.
 
 0.998
uox
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
 
 0.988
allC
Allantoicase; Function of strongly homologous gene; enzyme; Belongs to the allantoicase family.
 
 
 0.888
CCH85588.1
Homologs of previously reported genes of unknown function.
 
     0.884
allB
Allantoinase; Function of strongly homologous gene; enzyme.
 
  
 0.875
CCH85673.1
Cytosine deaminase; Function of strongly homologous gene; enzyme.
 
   
 0.640
guaD
Guanine deaminase; Function of strongly homologous gene; enzyme.
 
   
 0.631
CCH86947.1
5-methylthioadenosine/S-adenosylhomocysteine deaminase; Function of strongly homologous gene; enzyme.
 
   
 0.615
CCH86941.1
Amidohydrolase; Function of strongly homologous gene; enzyme.
 
   
 0.536
CCH85584.1
Xanthine phosphoribosyltransferase; Function of strongly homologous gene; enzyme.
       0.527
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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