STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85589.1Putative anti-sigma regulatory factor, serine/threonine protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (308 aa)    
Predicted Functional Partners:
CCH90800.1
Putative Anti-sigma-B factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the anti-sigma-factor antagonist family.
 
   0.641
CCH90896.1
Homologs of previously reported genes of unknown function.
  
     0.635
CCH87508.1
Homologs of previously reported genes of unknown function.
  
     0.623
CCH87004.1
Homologs of previously reported genes of unknown function.
  
     0.619
CCH86724.1
Homologs of previously reported genes of unknown function.
 
   0.591
CCH87961.1
Anti-sigma-factor antagonist; Function of strongly homologous gene; factor.
  
   0.571
CCH87558.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
  
     0.529
sigF
RNA polymerase sigma-F factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
 
 
 0.523
CCH86140.1
Homologs of previously reported genes of unknown function.
  
     0.516
CCH88697.1
Homologs of previously reported genes of unknown function.
  
     0.513
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.