STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
CCH85654.1Alkylated DNA repair protein, DNA-N1-methyladenine dioxygenase; Function of strongly homologous gene; enzyme. (209 aa)    
Predicted Functional Partners:
panE
2-dehydropantoate 2-reductase; Function of strongly homologous gene; enzyme.
   
    0.793
ada
Transcriptional regulator, Ada family; Function of strongly homologous gene; factor.
  
  
 0.723
soxR
Redox-sensitive transcriptional activator soxR; Function of strongly homologous gene; regulator.
      0.605
recQ
ATP-dependent DNA helicase RecQ; Function of strongly homologous gene; enzyme.
   
 
 0.598
CCH90877.1
Cytochrome c domain-containing protein; Homologs of previously reported genes of unknown function.
  
     0.455
CCH89721.1
Homologs of previously reported genes of unknown function.
 
    0.450
CCH90398.1
Homologs of previously reported genes of unknown function.
  
     0.421
CCH85652.1
Histidinol phosphate phosphatase HisJ family; Function of strongly homologous gene; enzyme; Belongs to the PHP hydrolase family. HisK subfamily.
       0.403
CCH88372.1
Putative 4-hydroxyphenylpyruvate dioxygenase containing a TIM-barrel fold (N-ter); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.402
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.