STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85654.1Alkylated DNA repair protein, DNA-N1-methyladenine dioxygenase; Function of strongly homologous gene; enzyme. (209 aa)    
Predicted Functional Partners:
panE
2-dehydropantoate 2-reductase; Function of strongly homologous gene; enzyme.
   
    0.771
ada
Transcriptional regulator, Ada family; Function of strongly homologous gene; factor.
  
  
 0.668
soxR
Redox-sensitive transcriptional activator soxR; Function of strongly homologous gene; regulator.
      0.609
recQ
ATP-dependent DNA helicase RecQ; Function of strongly homologous gene; enzyme.
   
   0.585
CCH90877.1
Cytochrome c domain-containing protein; Homologs of previously reported genes of unknown function.
  
     0.455
CCH89721.1
Homologs of previously reported genes of unknown function.
 
    0.448
CCH90398.1
Homologs of previously reported genes of unknown function.
  
     0.421
CCH85652.1
Histidinol phosphate phosphatase HisJ family; Function of strongly homologous gene; enzyme; Belongs to the PHP hydrolase family. HisK subfamily.
       0.403
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.