STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85656.1Homologs of previously reported genes of unknown function. (221 aa)    
Predicted Functional Partners:
CCH85658.1
Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator.
 
     0.937
CCH85657.1
ABC transporter ATP-binding protein; Function of strongly homologous gene; enzyme.
 
     0.922
CCH87736.1
Membrane protein of unknown function, putative kinase domain; No homology to any previously reported sequences.
  
     0.513
CCH87746.1
Homologs of previously reported genes of unknown function.
  
     0.449
CCH85659.1
Transcriptional regulator, PadR-like family; Function of strongly homologous gene; regulator.
       0.444
CCH88754.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.442
ureD
Urease accessory protein; Function of strongly homologous gene; enzyme.
 
     0.432
CCH85964.1
Homologs of previously reported genes of unknown function.
  
     0.428
CCH87962.1
Anti-sigma regulatory factor, serine/threonine protein kinase; Function of strongly homologous gene; factor.
  
     0.427
catC
Muconolactone Delta-isomerase; Function of strongly homologous gene; enzyme.
  
     0.409
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.