STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85659.1Transcriptional regulator, PadR-like family; Function of strongly homologous gene; regulator. (250 aa)    
Predicted Functional Partners:
CCH85657.1
ABC transporter ATP-binding protein; Function of strongly homologous gene; enzyme.
  
    0.559
ureA
Urease subunit gamma; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the urease gamma subunit family.
       0.530
ureB
Urease beta subunit (modular protein); Function of strongly homologous gene; enzyme.
       0.530
ureC
Urease alpha subunit (Urea amidohydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.530
ureF
Urease accessory protein ureF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
       0.530
CCH85658.1
Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator.
  
    0.509
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
       0.496
ureD
Urease accessory protein; Function of strongly homologous gene; enzyme.
       0.496
allB
Allantoinase; Function of strongly homologous gene; enzyme.
       0.496
CCH85656.1
Homologs of previously reported genes of unknown function.
       0.444
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.