STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allBAllantoinase; Function of strongly homologous gene; enzyme. (441 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase (catalytic subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 0.999
carA
Carbamoyl-phosphate synthase small chain; Function of strongly homologous gene; enzyme; Belongs to the CarA family.
 
  
 0.983
carB
Carbamoyl phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.
 
 
 0.981
allC
Allantoicase; Function of strongly homologous gene; enzyme; Belongs to the allantoicase family.
 
 0.971
pyrD
Dihydroorotate dehydrogenase (catalytic subunit); Catalyzes the conversion of dihydroorotate to orotate.
 
 0.970
CCH85587.1
Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Function of strongly homologous gene; enzyme.
 
  
 0.956
glxK
Glycerate kinase; Function of strongly homologous gene; enzyme; Belongs to the glycerate kinase type-1 family.
 
 
 0.928
uox
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
 
 0.920
yedX
5-hydroxyisourate hydrolase; Function of strongly homologous gene; enzyme; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.875
pyrK
Dihydroorotate dehydrogenase electron transfer subunit; Function of strongly homologous gene; enzyme.
 
 
 0.870
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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