STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allCAllantoicase; Function of strongly homologous gene; enzyme; Belongs to the allantoicase family. (373 aa)    
Predicted Functional Partners:
allB
Allantoinase; Function of strongly homologous gene; enzyme.
 
 0.971
CCH85587.1
Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Function of strongly homologous gene; enzyme.
 
 0.959
yedX
5-hydroxyisourate hydrolase; Function of strongly homologous gene; enzyme; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
 0.888
CCH89588.1
Putative D-phenylhydantoinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.815
CCH88491.1
Polysaccharide deacetylase; Function of strongly homologous gene; enzyme.
  
 
 0.786
uox
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
  
 0.773
ureB
Urease beta subunit (modular protein); Function of strongly homologous gene; enzyme.
    
  0.763
ureA
Urease subunit gamma; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the urease gamma subunit family.
    
  0.762
ureC
Urease alpha subunit (Urea amidohydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.762
CCH85588.1
Homologs of previously reported genes of unknown function.
 
     0.679
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.