STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85677.1Lipoprotein; Function of strongly homologous gene; lipoprotein. (269 aa)    
Predicted Functional Partners:
CCH85674.1
Putative transmembrane anti-sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
     0.961
CCH85676.1
Peptidase C60 sortase A and B; Function of strongly homologous gene; enzyme.
 
     0.948
CCH85675.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.935
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.631
csdB
Selenocysteine lyase; Probably catalyzes the conversion of hercynylcysteine sulfoxide to ergothioneine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. EgtE subfamily.
       0.560
CCH89908.1
Peptidase C60 sortase A and B; Function of strongly homologous gene; enzyme.
 
     0.556
CCH89587.1
Peptidase C60 sortase A and B (fragment); Function of strongly homologous gene; enzyme.
 
     0.525
CCH89579.1
Peptidase C60 sortase A and B; Function of strongly homologous gene; enzyme.
 
     0.518
CCH85679.1
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
   0.509
CCH85843.1
Endonuclease/exonuclease/phosphatase; Function of strongly homologous gene; enzyme.
 
     0.435
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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