STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
csdBSelenocysteine lyase; Probably catalyzes the conversion of hercynylcysteine sulfoxide to ergothioneine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. EgtE subfamily. (380 aa)    
Predicted Functional Partners:
sufU
FeS cluster assembly, scaffold; Function of strongly homologous gene; cell process.
 
 0.954
sufC
ABC transporter associated with Fe-S cluster assembly, ATP binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.758
sufD
FeS assembly protein SufD; Function of strongly homologous gene; cell process.
 
 
 0.682
gcvP
Glycine cleavage system P-protein (glycine dehydrogenase); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.681
trxB
Two component thioredoxin reductase carring response regulator; Function of strongly homologous gene; enzyme.
  
 
  0.651
sufB
Transport protein associated with Fe-S cluster assembly, sufB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.642
moeB
Molybdopterin-synthase sulfurylase; Function of strongly homologous gene; enzyme.
  
 
 0.597
CCH85674.1
Putative transmembrane anti-sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
     
 0.583
CCH85675.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.570
CCH85677.1
Lipoprotein; Function of strongly homologous gene; lipoprotein.
       0.560
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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