STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH85688.1Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; enzyme. (257 aa)    
Predicted Functional Partners:
CCH85687.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
 
 0.992
CCH88397.1
Oligopeptide transporter subunit; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
   
0.905
CCH89426.1
ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
     
0.885
CCH86300.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
 
 0.798
CCH87418.1
Transporter subunit: permease component of ABC superfamily transporter; Function of strongly homologous gene; transporter.
 
 
  
 0.732
CCH87592.1
Amino acid ABC transporter membrane protein (fragment).
 
 
  
 0.703
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.558
pheS
Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
 
 0.550
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
 
 
 0.540
CCH88173.1
ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein (modular protein); Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
  
0.540
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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