STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katAManganese-containing catalase; Function of strongly homologous gene; enzyme. (287 aa)    
Predicted Functional Partners:
CCH90868.1
Homologs of previously reported genes of unknown function.
  
     0.662
CCH86602.1
Homologs of previously reported genes of unknown function.
 
     0.606
CCH87059.1
Homologs of previously reported genes of unknown function.
 
     0.549
CCH90392.1
Homologs of previously reported genes of unknown function.
 
     0.514
rhtA
Inner membrane transporter rhtA; Function of strongly homologous gene; transporter.
       0.512
sodN
Superoxide dismutase [Ni]; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.500
CCH85697.1
Homologs of previously reported genes of unknown function.
       0.486
CCH87227.1
Homologs of previously reported genes of unknown function.
 
    0.482
CCH88468.1
Homologs of previously reported genes of unknown function.
 
   
 0.449
CCH90878.1
Zinc/iron permease; Function of strongly homologous gene; transporter.
 
     0.429
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.