STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylFMultiple monosaccharide-binding extracellular receptor; Function of strongly homologous gene; receptor. (384 aa)    
Predicted Functional Partners:
xylG
Xylose transport ATP-binding protein; Function of strongly homologous gene; enzyme.
 
 0.996
xylH
Xylose transport system permease protein araH; Function of strongly homologous gene; enzyme; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
CCH90499.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; Function of strongly homologous gene; transporter.
  
 
 0.743
rbsA-5
ABC ribose transport ATP binding protein; Function of strongly homologous gene; transporter.
  
 
 0.743
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.651
CCH85714.1
Class II aldolase/adducin family protein; Function of strongly homologous gene; enzyme.
 
  
 0.568
xylA
Xylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family.
 
  
 0.544
CCH88578.1
Extracellular sugar-binding lipoprotein; Function of strongly homologous gene; transporter.
 
  
 0.480
CCH85713.1
Carbohydrate kinase, FGGY-domain; Function of strongly homologous gene; enzyme.
 
   
 0.472
CCH90846.1
Homologs of previously reported genes of unknown function.
 
 
 0.455
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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