STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylHXylose transport system permease protein araH; Function of strongly homologous gene; enzyme; Belongs to the binding-protein-dependent transport system permease family. (423 aa)    
Predicted Functional Partners:
xylF
Multiple monosaccharide-binding extracellular receptor; Function of strongly homologous gene; receptor.
  
 0.972
xylG
Xylose transport ATP-binding protein; Function of strongly homologous gene; enzyme.
  
 0.961
rbsB
ABC transporter; Function of strongly homologous gene; transporter.
  
 0.944
CCH86357.1
Sugar uptake ABC transporter solute-binding protein; Function of strongly homologous gene; transporter.
  
 0.897
rbsA-4
Ribose import ATP-binding protein rbsA; Function of strongly homologous gene; enzyme.
  
 0.731
CCH86356.1
ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter.
  
 0.730
rbsA
ABC transporter, ATP binding subunit (putative high-affinity D-ribose transport); Function of strongly homologous gene; transporter.
  
 0.710
rbsA-3
ABC transporter, ATP binding subunit (putative high-affinity D-ribose transport); Function of strongly homologous gene; transporter.
  
 0.704
CCH85712.1
Transcriptional regulator, LacI family; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.661
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.640
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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