STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (506 aa)    
Predicted Functional Partners:
CCH85714.1
Class II aldolase/adducin family protein; Function of strongly homologous gene; enzyme.
 
 0.998
CCH85713.1
Carbohydrate kinase, FGGY-domain; Function of strongly homologous gene; enzyme.
 
  
 0.961
CCH88186.1
Beta-xylosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.905
CCH87625.1
Beta-xylosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.904
CCH88399.1
Xylosidase/arabinosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.904
CCH88160.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.889
CCH90167.1
NAD-dependent epimerase/dehydratase; Function of strongly homologous gene; enzyme.
     
  0.800
xylA
Xylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family.
 
   
 0.775
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
   
  
 0.755
xylF
Multiple monosaccharide-binding extracellular receptor; Function of strongly homologous gene; receptor.
 
     0.672
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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